Higher Plants Research Articles

A REVIEW ON THE β-CAROTENE: PRODUCTION, EXTRACTION, SYNTHESIS AND BIOLOGICAL PROPERTIES

The presence of double bonds gives β-carotene its distinctive hue, making it an oxygen-deficient isoprene-containing molecule. There are cyclic rings at both ends of the molecule. The present review was based on the production, extraction, synthesis and biological properties of β-carotene. Mammals can't produce carotenoids from scratch; therefore, they must get them from somewhere else. Algae, higher plants (in fruits and flowers as esters), fungi, and animals all have these yellow, red, and orange pigments in their natural forms. Carotenoids are found in human breast milk and can be modified through the mother's diet. Hexane, tetrahydrofuran, and acetone are examples of aprotic organic solvents that can be used for solvent-based extraction of -carotene from algae after and before they have been treated. The -carotene in algae, fungi, and plants can be extracted with the help of these solvents. The extraction process for -carotene is sped up and improved by the use of supercritical fluids. Increasing beta-carotene production can be accomplished by tailoring a number of environmental factors, including the type of organism used in the cultivation process, the amount of light available, the amount of salt present, the pH level, and the type and availability of carbon sources. Microalgae, plants, and fungus have all been optimised to increase their beta-carotene synthesis. It concluded that when administered in different doses, it has been shown to have effects like antioxidant and anti-inflammatory. it is also effective against cancer, cardiovascular diseases, Covid-19 and various other diseases.

Parallel evolution of angiosperm-like venation in Peltaspermales: a reinvestigation of Furcula.

Leaf venation is a pivotal trait in the success of vascular plants. Whereas gymnosperms have single or sparsely branched parallel veins, angiosperms developed a hierarchical structure of veins that form a complex reticulum. Its physiological consequences are considered to have enabled angiosperms to dominate terrestrial ecosystems in the Late Cretaceous and Cenozoic. Although a hierarchical-reticulate venation also occurs in some groups of extinct seed plants, it is unclear whether these are stem relatives of angiosperms or have evolved these traits in parallel. Here, we re-examine the morphology of the enigmatic foliage taxon Furcula, a potential early Mesozoic angiosperm relative, and argue that its hierarchical vein network represents convergent evolution (in the Late Triassic) with flowering plants (which developed in the Early Cretaceous) based on details of vein architecture and the absence of angiosperm-like stomata and guard cells. We suggest that its nearest relatives are Peltaspermales similar to Scytophyllum and Vittaephyllum, the latter being a genus that originated during the Late Triassic (Carnian) and shares a hierarchical vein system with Furcula. We further suggest that the evolution of hierarchical venation systems in the early Permian, the Late Triassic, and the Early Cretaceous represent 'natural experiments' that might help resolve the selective pressures enabling this trait to evolve.

Novel Phosphate Transporter-B PvPTB1;1/1;2 Contribute to Efficient Phosphate Uptake and Arsenic Accumulation in As-Hyperaccumulator Pteris vittata.

Arsenic (As) contamination in soil poses a potential threat to human health via crop uptake. As-hyperaccumulator Pteris vittata serves as a model plant to study As uptake and associated mechanisms. This study focuses on a novel P/AsV transport system mediated by low-affinity phosphate transporter-B 1 family (PTB1) in P. vittata. Here, we identified two plasma-membrane-localized PTB1 genes, PvPTB1;1/1;2, in vascular plants for the first time, which were 4.4-40-fold greater in expression in P. vittata than in other Pteris ferns. Functional complementation of a yeast P-uptake mutant and enhanced P accumulation in transgenic Arabidopsis thaliana confirmed their role in P uptake. Moreover, the expression of PvPTB1;1/1;2 facilitated the transport and accumulation of As in both yeast and A. thaliana shoots, demonstrating a comparable AsV uptake capacity. Microdissection-qPCR analysis and single-cell transcriptome analysis collectively suggest that PvPTB1;1/1;2 are specifically expressed in the epidermal cells of P. vittata roots. PTB1 may play a pivotal role in efficient P recycling during phytate secretion and hydrolysis in P. vittata roots. In summary, the dual P transport mechanisms consisting of high-affinity Pht1 and low-affinity PTB1 may have contributed to the efficient P/As uptake in P. vittata, thereby contributing to efficient phytoremediation for As-contaminated soils.

First record of the semi-aquatic invasive plant Crassula helmsii in the Iberian Peninsula and its link to potential dispersal drivers

AbstractAquatic neophytes are among the most harmful invasive species worldwide. Here we report the finding of the semi-aquatic invasive plant Crassula helmsii, naturalized in a freshwater reservoir that provides water to the large city of A Coruña, NW Spain. To better understand the extent and potential environmental correlates of C. helmsii invasion, we recorded the presence and frequency of C. helmsii in its emerged and floating mat forms at twelve sampling sites along the reservoir margins, and characterized the soil characteristics, plant community and environmental factors. Crassula helmsii is dispersed by fragmentation of the stems, potentially aided through shredding by local fauna such as the invasive crayfish Procambarus clarkii. We hypothesize that this could be a case of an invasional meltdown, when multiple invasive species facilitate one another and have synergistic effects on native ecosystems. The emerged form of C. helmsii was found in ten out of twelve sites with a mean cover value of 9.8 ± 10.4% (mean ± SD). We found no correlation between frequency of the emerged form of C. helmsii and abundance of Procambarus clarkii, but frequency of the emerged form of C. helmsii increased with higher soil nitrogen and vascular plant richness. We outline emergency actions for management of C. helmsii at this stage of the invasion, focusing on containment and avoiding spread to nearby water bodies.

A bird’s-eye view: exploration of the flavin-containing monooxygenase superfamily in common wheat

The Flavin Monooxygenase (FMO) gene superfamily in plants is involved in various processes most widely documented for its involvement in auxin biosynthesis, specialized metabolite biosynthesis, and plant microbial defense signaling. The roles of FMOs in defense signaling and disease resistance have recently come into focus as they may present opportunities to increase immune responses in plants including leading to systemic acquired resistance, but are not well characterized. We present a comprehensive catalogue of FMOs found in genomes across vascular plants and explore, in depth, 170 wheat TaFMO genes for sequence architecture, cis-acting regulatory elements, and changes due to Transposable Element insertions. A molecular phylogeny separates TaFMOs into three clades (A, B, and C) for which we further report gene duplication patterns, and differential rates of homoeologue expansion and retention among TaFMO subclades. We discuss Clade B TaFMOs where gene expansion is similarly seen in other cereal genomes. Transcriptome data from various studies point towards involvement of subclade B2 TaFMOs in disease responses against both biotrophic and necrotrophic pathogens, substantiated by promoter element analysis. We hypothesize that certain TaFMOs are responsive to both abiotic and biotic stresses, providing potential targets for enhancing disease resistance, plant yield and other important agronomic traits. Altogether, FMOs in wheat and other crop plants present an untapped resource to be exploited for improving the quality of crops.

Climbing mechanisms as a central trait to understand the ecology of lianas across the tropics

AbstractAimsLianas are a central component of tropical forests. However, how the type of climbing mechanisms is related to the functional and taxonomic diversity of lianas across the tropics, remains largely unresolved. Here, we tested two main hypotheses: (i) the functional diversity of lianas differs with climbing mechanism (active and passive) and (ii) the association between taxonomic diversity with contemporary climate, paleoclimate, forest structure and phylogeny differ between climbing mechanisms.LocationTropical forests.Time PeriodPresent.Major Taxa StudiedTerrestrial plants.MethodsWe assembled functional traits and the type of climbing mechanism for 702 liana species and used the World Checklist of Vascular Plants (WCVP v.2.0) to standardize species names, map geographical distribution and estimate taxonomic richness. We used kernel density n‐dimensional hypervolume to estimate the functional diversity of each type of climbing mechanism. We compared the environmental response of taxonomic richness of each type of climbing mechanism, active and passive, to the response of overall liana species richness. We assessed the magnitude and direction of the environmental response considering variables of climate, soil fertility and forest structure.ResultsWe found that active climbing exhibits a higher functional richness than passive climbing. Richness patterns of active and passive climbing mechanisms were mainly driven by contemporary climate, paleoclimate and phylogenetic relatedness. More importantly, paleoclimate was negatively associated with active climbing and positively associated with passive climbing.Main ConclusionsOur study highlights differences in functional diversity (richness, dispersion, evenness and originality) between active and passive climbing species, likely reflecting their distinct ecological strategies for resource use, stress tolerance and dispersal. Integrating taxonomic and functional diversity metrics with information about the type of climbing mechanism provides deeper insights into the ecology and response of lianas to climate change.

Arbuscular Mycorrhizal Fungi-Mediated Modulation of Physiological, Biochemical, and Secondary Metabolite Responses in Hemp (Cannabis sativa L.) under Salt and Drought Stress

The increasing impact of global climate change has resulted in adversity stresses, like salt and drought, gradually becoming the main factors that limit crop growth. Hemp, which contains numerous medicinal active components and multiple bioactive functions, is widely used in the agricultural, industrial, and medical fields, hence promoting the rapid development of related industries. Arbuscular mycorrhizal fungi (AMF) can establish a symbiotic relationship with 80% of vascular plants. This symbiosis promotes host plant growth, regulates plant physiology and biochemistry, facilitates secondary metabolite synthesis, and enhances resistance to abiotic stresses. However, the effects of salt stress, drought stress, and AMF interaction in hemp are not well understood. In this study, to investigate this, we performed a study where we cultured hemp that was either inoculated or uninoculated with Funneliformis mosseae and determined changes in effective colonization rate, growth, soluble substances, photosynthesis, fluorescence, ions, and secondary metabolites by cultivating hemp under different concentrations of NaCl (0 mM, 100 mM, and 200 mM) and different soil moisture content (45%, 25%, and 15%). The results showed that salt, drought stress, or salt–drought interaction stress all inhibited colonization rate after stress, plant growth, mainly due to ion toxicity and oxidative damage. Inoculation with F. mosseae effectively alleviated plant growth inhibition under 100 mM NaCl salt stress, drought stress, and salt–drought interaction stress conditions. It also improved osmoregulation, photosynthetic properties, fluorescence properties, and ion homeostasis, and promoted the accumulation of secondary metabolites. However, under 200 mM NaCl salt stress conditions, inoculation with F. mosseae negatively affected plant physiology, biochemistry, and secondary metabolite synthesis, although it did alleviate growth inhibition. The results demonstrate that there are different effects of salt–drought interaction stress versus single stress (salt or drought stress) on plant growth physiology. In addition, we provide new insights about the positive effects of AMF on host plants under such stress conditions and the effects of AMF on plants under high salt stress.

Chloroplast genome structure analysis of Equisetum unveils phylogenetic relationships to ferns and mutational hotspot region

Equisetum is one of the oldest extant group vascular plants and is considered to be the key to understanding vascular plant evolution. Equisetum is distributed almost all over the world and has a high degree of adaptability to different environments. Despite the fossil record of horsetails (Equisetum, Equisetaceae) dating back to the Carboniferous, the phylogenetic relationship of this genus is not well, and the chloroplast evolution in Equisetum remains poorly understood. In order to fill this gap, we sequenced, assembled, and annotated the chloroplast genomes of 12 species of Equisetum, and compared them to 13 previously published vascular plants chloroplast genomes to deeply examine the plastome evolutionary dynamics of Equisetum. The chloroplast genomes have a highly conserved quadripartite structure across the genus, but these chloroplast genomes have a lower GC content than other ferns. The size of Equisetum plastomes ranges from 130,773 bp to 133,684 bp and they encode 130 genes. Contraction/expansion of IR regions and the number of simple sequences repeat regions underlie large genomic variations in size among them. Comparative analysis revealed we also identified 13 divergence hotspot regions. Additionally, the genes accD and ycf1 can be used as potential DNA barcodes for the identification and phylogeny of the genus Equisetum. Twelve photosynthesis-related genes were specifically selected in Equisetum. Comparative genomic analyses implied divergent evolutionary patterns between Equisetum and other ferns. Phylogenomic analyses and molecular dating revealed a relatively distant phylogenetic relationship between Equisetum and other ferns, supporting the division of pteridophyte into Lycophytes, Equisetaceae and ferns. The results show that the chloroplast genome can be used to solve phylogenetic problems within or between Equisetum species, and also provide genomic resources for the study of Equisetum systematics and evolution.

Structural shifts in plant functional diversity during biogeomorphic succession: Moving beyond taxonomic investigations in an alpine glacier foreland

AbstractThe complex interrelation between plants and geomorphic processes is described in the concept of biogeomorphic succession. While ecological research on succession and community assembly has transitioned towards functional approaches, studies on functional diversity in biogeomorphic settings, particularly in glacier forelands, remain limited. In this study, we investigated abundance of vascular plant species and functional traits in an alpine glacier foreland using data from 199 plots. Our objective was to unravel the development of functional diversity during biogeomorphic succession. Specifically, the study determined whether structural shifts in functional diversity are associated with stability thresholds related to plant cover, geomorphic influence, and examined trait spectra for stages of biogeomorphic succession. Our findings revealed a nonlinear trajectory of functional diversity along the plant cover gradient, marked by two distinct structural shifts at 30% and 74% cover, corresponding to established stability thresholds. Along the gradient of geomorphic influence, we observed an increase in functional diversity until 54% of the plot area was affected, beyond which functional diversity declined below the initial level. The analysis of community‐weighted means of traits across four stages of biogeomorphic succession determined by plant cover and absence and presence of geomorphic influence revealed significant differences in trait values. In the transition to the biogeomorphic stage, associated with the identified initial structural shift, there is a shift from a prevalence of above‐ground adaptation and reproductive traits, such as leaf longevity, structure, growth form and mixed reproductive strategies, to an increased dominance of competitor species and traits related to below‐ground structures, including root type and structures, as well as vegetative reproduction. Our results contribute to understanding the relationship between vegetation succession and geomorphic influence by linking them to plant functional traits. This study advances beyond traditional taxonomic investigations by emphasizing functional approaches to biogeomorphic succession. Moreover, the functional trait data used in this study, easily downloadable from a public repository, can serve as a valuable template for future research in (bio)geomorphology, along with the employed methodologies.

Spatiotemporal dynamics of dissolved organic matter in subtropical karst cave waters identified by optical properties

Natural dissolved organic matter (DOM) is ubiquitous in aquatic environments and is an essential component in the carbon cycle in karst areas. To improve understanding of the carbon cycle in karst caves with heterogeneous hydrological processes, we examined the spatiotemporal variability of DOM composition and further uncovered its source and fate. Results may also provide insights into the feedbacks of organic carbon to carbon sinks in karst regions. In this study, concentrations and compositions of DOM, partial pressure of aqueous carbon dioxide (pCO2), dissolved inorganic carbon, and other physicochemical parameters were investigated in a karst cave at Mahuang, Southwest China. Ultraviolet-visible absorption spectroscopy was coupled with multiple statistical analyses to identify the compositional variations and potential fates of DOM in cave waters. The results showed that DOM dynamics were regulated by both terrigenous and biogenic drivers under the control of meteorological conditions. With higher air temperature, precipitation, and microbial activity, fulvic fractions were consumed to generate CO2, leading to the accumulation of refractory DOM in cave waters and changing the hydrochemical features. When temperature and precipitation decreased, DOM was dominated by lignin fractions, which served as an indicator of terrestrial inputs and vascular plants, suggesting variation in the preferential fraction of biological consumption. In addition, different hydrological path patterns influenced DOM properties in cave waters due to differences in recharging, the leaching process, and subsurface reworking. Thus, hydrology could serve as an important constraint on the coupling between dissolved organic and inorganic carbon.

Near telomere-to-telomere genome assemblies of two Chlorella species unveil the composition and evolution of centromeres in green algae

BackgroundCentromeres play a crucial and conserved role in cell division, although their composition and evolutionary history in green algae, the evolutionary ancestors of land plants, remains largely unknown.ResultsWe constructed near telomere-to-telomere (T2T) assemblies for two Trebouxiophyceae species, Chlorella sorokiniana NS4-2 and Chlorella pyrenoidosa DBH, with chromosome numbers of 12 and 13, and genome sizes of 58.11 Mb and 53.41 Mb, respectively. We identified and validated their centromere sequences using CENH3 ChIP-seq and found that, similar to humans and higher plants, the centromeric CENH3 signals of green algae display a pattern of hypomethylation. Interestingly, the centromeres of both species largely comprised transposable elements, although they differed significantly in their composition. Species within the Chlorella genus display a more diverse centromere composition, with major constituents including members of the LTR/Copia, LINE/L1, and LINE/RTEX families. This is in contrast to green algae including Chlamydomonas reinhardtii, Coccomyxa subellipsoidea, and Chromochloris zofingiensis, in which centromere composition instead has a pronounced single-element composition. Moreover, we observed significant differences in the composition and structure of centromeres among chromosomes with strong collinearity within the Chlorella genus, suggesting that centromeric sequence evolves more rapidly than sequence in non-centromeric regions.ConclusionsThis study not only provides high-quality genome data for comparative genomics of green algae but gives insight into the composition and evolutionary history of centromeres in early plants, laying an important foundation for further research on their evolution.

Adapting Ferritin, a Naturally Occurring Protein Cage, to Modulate Intrinsic Agonism of OX40.

Ferritin is a multivalent, self-assembling protein scaffold found in most human cell types, in addition to being present in invertebrates, higher plants, fungi, and bacteria, that offers an attractive alternative to polymer-based drug delivery systems (DDS). In this study, the utility of the ferritin cage as a DDS was demonstrated within the context of T cell agonism for tumor killing. Members of the tumor necrosis factor receptor superfamily (TNFRSF) are attractive targets for the development of anticancer therapeutics. These receptors are endogenously activated by trimeric ligands that occur in transmembrane or soluble forms, and oligomerization and cell-surface anchoring have been shown to be essential aspects of the targeted agonism of this receptor class. Here, we demonstrated that the ferritin cage could be easily tailored for multivalent display of anti-OX40 antibody fragments on its surface and determined that these arrays are capable of pathway activation through cell-surface clustering. Together, these results confirm the utility, versatility, and developability of ferritin as a DDS.

Sphaerocrystals in seeds of Euphorbia subgenus Esula (Euphorbiaceae): morphology, occurrence, and relationship with phylogeny

Abstract The term ‘sphaerocrystals’ (also sphaerites) in classic plant morphology was usually applied to spherical bodies visible in polarized light with a characteristic ‘Maltese cross’ and consisting of both inorganic and organic compounds. Initially sphaerocrystals were found in algal cells but were later also discovered in various organs of vascular plants (including seeds). Several authors noticed spherical particles on the seed surface and in testa cells of some Euphorbia species but a comprehensive study of this character in the genus (including the morphological origin of such particles) has not been carried out. We studied 72 species belonging to all 21 sections of Euphorbia subgenus Esula for presence of spherical particles on seed surface and in the testa using scanning, transmission, confocal laser electron microscopy, and light microscopy; histochemical and element analyses were also involved. We found that these particles have the same morphological features (including the demonstration of ‘Maltese cross’ in polarized light) as the ‘classic’ sphaerocrystals. We have recorded sphaerocrystals in 53 sampled species belonging to 20 sections of Euphorbia subgenus Esula; they are localized mostly in mesotesta cells and in some species are exuded onto the seed surface where they are often aggregated into clusters. Sphaerocrystals were absent in the sampled species (with one exception) of one of the major clades of the subgenus, formed by E. sect. Helioscopia and E. sect. Holophyllum. The absence of sphaerocrystals in this early divergent lineage of E. subgen. Esula may be related with adaptation of species of this lineage to more mesic habitats.

Long-term radiological assessment of a Mediterranean freshwater ecosystem surrounding a nuclear power plant.

The radionuclide concentration of man-made radionuclides on non-human biota in freshwater ecosystems has been extensively studied in environments affected by the Chernobyl and Fukushima accidents, in both humid continental and subtropical climates, respectively. However, there are very few studies that assess the long-term effects of operating nuclear facilities in Mediterranean environments. In the present study, a temporal analysis of the impact on carp, cattail, and bulrushes in the cooling pond of the currently operating Almaraz nuclear power plant was investigated for the period 2000-2020. The results do not show a general trend in man-made radionuclide concentrations. Instead, depending on their availability and the type of organism, trends decrease over time. This is also reflected in the effective half-lives obtained, which are lower than the physical half-life for some radionuclides. Transfer coefficients for the main man-made radionuclides detected were obtained, and it was found that these were significantly lower than the typical ranges found for benthic fish and vascular plants in freshwater ecosystems. Finally, the internal and external doses received by the carp have been evaluated using ERICA tool, and it has been observed that the main contribution to the total dose is due to the internal dose (0.65-7.04) × 10-4µGy/h.

ACL5 acquired strict thermospermine synthesis activity during the emergence of vascular plants.

Norspermine (Nspm), one of the uncommon polyamines (PAs), was detected in bryophytes and lycophytes; therefore, the aminopropyltransferases involved in the synthesis of Nspm were investigated. The enzymatic activity was evaluated by the transient high expression of various aminopropyltransferase genes in Nicotiana benthamiana, followed by quantification of PA distribution in the leaves using gas chromatography-mass spectrometry. The bryophyte orthologues of ACL5, which is known to synthesise thermospermine (Tspm) in flowering plants, were found to have strong Nspm synthesis activity. In addition, two ACL5 orthologous with different substrate specificities were conserved in Selaginella moellendorffii, one of which was involved in Tspm synthesis and the other in Nspm synthesis. Therefore, further detailed analysis using these two factors revealed that the β-hairpin structural region consisting of β-strands 1 and 2 at the N-terminus of ACL5 is involved in substrate specificity. Through functional analysis of a total of 40 ACL5 genes in 33 organisms, including algae, it was shown that ACL5 has changed its substrate specificity several times during plant evolution and diversification. Furthermore, it was strongly suggested that ACL5 acquired strict Tspm synthesis activity during the emergence of vascular plants, especially through major changes around the β-hairpin structural region.

The Vascular Plant Flora Burabay National Park, Kazakhstan: Composition, Life Form Classification and Ecological Groups

The Vascular Plant Flora Burabay National Park, Kazakhstan: Composition, Life Form Classification and Ecological Groups

Green Synthesis of Gold Nanoparticles Using Liquiritin and Other Phenolics from Glycyrrhiza glabra and Their Anti-Inflammatory Activity

Phenolic compounds are the main phytochemical constituents of many higher plants. They play an important role in synthesizing metal nanoparticles using green technology due to their ability to reduce metal salts and stabilize them through physical interaction/conjugation to the metal surface. Six pure phenolic compounds were isolated from licorice (Glycyrrhiza glabra) and employed in synthesizing gold nanoparticles (AuNPs). The isolated compounds were identified as liquiritin (1), isoliquiritin (2), neoisoliquiritin (3), isoliquiritin apioside (4), liquiritin apioside (5), and glabridin (6). The synthesized AuNPs were characterized using UV, zeta sizer, HRTEM, and IR and tested for their stability in different biological media. The phenolic isolates and their corresponding synthesized NP conjugates were tested for their potential in vitro cytotoxicity. The anti-inflammatory effects were investigated in both normal and inflammation-induced settings, where inflammatory biomarkers were stimulated using lipopolysaccharides (LPSs) in the RAW 264.7 macrophage cell line. LPS, functioning as a mitogen, promotes cell growth by reducing apoptosis, potentially contributing to observed outcomes. Results indicated that all six pure phenolic isolates inhibited cell proliferation. The AuNP conjugates of all the phenolic isolates, except liquiritin apioside (5), inhibited cell viability. LPS initiates inflammatory markers by binding to cell receptors and setting off a cascade of events leading to inflammation. All the pure phenolic isolates, except isoliquiritin, neoisoliquiritin, and isoliquiritin apioside inhibited the inflammatory activity of RAW cells in vitro.

Biogeochemical prospecting of metallic critical raw materials: soil to plant transfer in SW Ciudad Real Province, Spain.

The soil-plant transfer of trace elements is a complex system in which many factors are involved such as the availability and bioavailability of elements in the soil, climate, pedological parameters, and the essential or toxic character of the elements. The present study proposes the evaluation of the use of multielement contents in vascular plants for prospecting ore deposits of trace elements of strategic interest for Europe. To accomplish this general goal, a study of the soil-plant transfer of major and trace elements using Quercus ilex as a study plant has been developed in the context of two geological domains with very different characteristics in geological terms and in the presence of ore deposits: the Almadén syncline for Hg and the Guadalmez syncline for Sb. The results have made it possible to differentiate geological domains not only in terms of individual elements, but also as a combination of major and trace elements using Factor Analysis. The bioconcentration factors have demonstrated the uptake of macronutrients and micronutrients in very high concentrations but these were barely dependent, or even independent of the concentrations in the soil, in addition to high values of this factor for Sb. The Factor Analysis allowed for the differentiation of geogenic elements from other linked to stibnite ore deposits (Sb, S, and Cu). This element (Sb) can be uptake by Quercus ilex via the root and from there translocating it to the leaves, showing a direct relation between concentrations in soil and plants. This finding opens the possibility of using Quercus ilex leaves for biogeochemical prospecting of geological domains or lithological types of interest to prospect for Sb deposits.

Non-invasive Abiotic Stress Phenotyping of Vascular Plant in Each Vegetative Organ View

Non-invasive Abiotic Stress Phenotyping of Vascular Plant in Each Vegetative Organ View

Identification, Classification, and Transcriptional Analysis of Rab GTPase Genes from Tomato (Solanum lycopersicum) Reveals Salt Stress Response Genes

Salinity in plants generates an osmotic and ionic imbalance inside cells that compromises the viability of the plant. Rab GTPases, the largest family within the small GTPase superfamily, play pivotal roles as regulators of vesicular trafficking in plants, including the economically important and globally cultivated tomato (Solanum lycopersicum). Despite their significance, the specific involvement of these small GTPases in tomato vesicular trafficking and their role under saline stress remains poorly understood. In this work, we identified and classified 54 genes encoding Rab GTPases in cultivated tomato, elucidating their genomic distribution and structural characteristics. We conducted an analysis of duplication events within the S. lycopersicum genome, as well as an examination of gene structure and conserved motifs. In addition, we investigated the transcriptional profiles for these Rab GTPases in various tissues of cultivated and wild tomato species using microarray-based analysis. The results showed predominantly low expression in most of the genes in both leaves and vegetative meristem, contrasting with notably high expression levels observed in seedling roots. Also, a greater increase in gene expression in shoots from salt-tolerant wild tomato species was observed under normal conditions when comparing Solanum habrochaites, Solanum pennellii, and Solanum pimpinellifolium with S. lycopersicum. Furthermore, an expression analysis of Rab GTPases from Solanum chilense in leaves and roots under salt stress treatment were also carried out for their characterization. These findings revealed that specific Rab GTPases from the endocytic pathway and the trans-Golgi network (TGN) showed higher induction in plants exposed to saline stress conditions. Likewise, disparities in gene expression were observed both among members of the same Rab GTPase subfamily and between different subfamilies. Overall, this work emphasizes the high degree of conservation of Rab GTPases, their high functional diversification in higher plants, and the essential role in mediating salt stress tolerance and suggests their potential for further exploration of vesicular trafficking mechanisms in response to abiotic stress conditions.